STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureATIGRFAM: urease, gamma subunit; KEGG: bmj:BMULJ_00748 urease subunit gamma; PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family. (100 aa)    
Predicted Functional Partners:
ureC
TIGRFAM: urease, alpha subunit; KEGG: bpy:Bphyt_0928 urease subunit alpha; PFAM: amidohydrolase; Urease alpha-subunit domain protein.
 0.999
ureB
TIGRFAM: urease, beta subunit; KEGG: bpy:Bphyt_0929 urease, beta subunit; PFAM: Urease beta subunit; Belongs to the urease beta subunit family.
 0.999
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.988
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
  
 0.985
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
  
 0.976
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.972
alc
TIGRFAM: allantoicase; KEGG: bxe:Bxe_A1928 allantoicase; PFAM: Allantoicase region; Belongs to the allantoicase family.
    
  0.906
alc-2
TIGRFAM: allantoicase; KEGG: bpy:Bphyt_3387 allantoicase; PFAM: Allantoicase region; Belongs to the allantoicase family.
    
  0.906
allA
Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
    
  0.902
allA-2
Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
    
  0.902
Your Current Organism:
Paraburkholderia sp. CCGE1002
NCBI taxonomy Id: 640511
Other names: P. sp. CCGE1002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.