STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADG17968.1KEGG: bxe:Bxe_C1276 outer membrane autotransporter barrel protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin. (1318 aa)    
Predicted Functional Partners:
ADG16481.1
KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
  
  
 0.657
ADG17969.1
Hypothetical protein; KEGG: bra:BRADO2693 putative nucleoside-diphosphate-sugar epimerase.
       0.648
ADG20118.1
PFAM: Pili assembly chaperone, N-terminal; KEGG: bgl:bglu_2g01370 pili assembly chaperone.
  
  
 0.594
ADG20117.1
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bgl:bglu_2g01380 P pilus assembly protein porin PapC.
  
  
 0.575
ADG18425.1
KEGG: bxe:Bxe_B0793 hypothetical protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.
  
     0.555
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
 
 0.541
ADG16247.1
KEGG: bpy:Bphyt_2958 conserved hypothetical signal peptide protein.
  
     0.528
ADG16248.1
KEGG: bpy:Bphyt_2959 hypothetical protein.
  
     0.487
ADG20572.1
PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: bph:Bphy_5860 polypeptide-transport-associated domain-containing protein.
 
  
 0.475
ADG17970.1
PFAM: monooxygenase FAD-binding; KEGG: bpy:Bphyt_5380 FAD-dependent oxidoreductase.
       0.467
Your Current Organism:
Paraburkholderia sp. CCGE1002
NCBI taxonomy Id: 640511
Other names: P. sp. CCGE1002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.