STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADG20098.1PFAM: virulence protein SciE type; KEGG: bac:BamMC406_3010 virulence protein SciE type. (278 aa)    
Predicted Functional Partners:
ADG20099.1
KEGG: bac:BamMC406_6690 type VI secretion system lysozyme-related protein; TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein.
 
    0.982
ADG20100.1
KEGG: bgl:bglu_2g01570 hypothetical protein; TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879.
 
    0.978
ADG20109.1
KEGG: bgl:bglu_2g01470 OmpA/MotB; TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: Type IV / VI secretion system, DotU; OmpA/MotB domain protein.
 
  
 0.970
ADG19372.1
KEGG: bph:Bphy_5978 type VI secretion protein; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein.
 
   0.969
ADG18273.1
KEGG: bac:BamMC406_3649 type VI secretion protein; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein.
 
   0.965
ADG20102.1
KEGG: bgl:bglu_2g01550 hypothetical protein; TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein.
 
  
 0.964
ADG20101.1
KEGG: bgl:bglu_2g01560 putative cytoplasmic protein; TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305.
 
    0.958
ADG19376.1
KEGG: bph:Bphy_5982 type VI secretion protein; TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879.
 
    0.907
ADG20113.1
KEGG: bgl:bglu_2g01430 hypothetical protein superfamily protein; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
    0.903
ADG19373.1
KEGG: bph:Bphy_5979 EvpB family type VI secretion protein; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
    0.899
Your Current Organism:
Paraburkholderia sp. CCGE1002
NCBI taxonomy Id: 640511
Other names: P. sp. CCGE1002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.