STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADN56237.1PFAM: protein of unknown function DUF330; KEGG: bpy:Bphyt_0494 hypothetical protein. (213 aa)    
Predicted Functional Partners:
ADN56236.1
PFAM: Mammalian cell entry related domain protein; KEGG: bxe:Bxe_A4223 ABC transporter, periplasmic ligand binding protein.
 
   0.949
ADN56234.1
PFAM: protein of unknown function DUF140; KEGG: bpy:Bphyt_0491 protein of unknown function DUF140.
 
  
 0.857
ADN56235.1
KEGG: bpy:Bphyt_0492 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.835
ADN56238.1
PFAM: VanZ family protein; KEGG: bxe:Bxe_A4221 hypothetical protein.
 
     0.765
ADN56286.1
KEGG: hypothetical protein.
  
     0.696
ADN56223.1
KEGG: bpy:Bphyt_0480 hypothetical protein.
  
     0.681
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
     0.680
ADN56260.1
KEGG: bxe:Bxe_A4193 hypothetical protein.
  
     0.677
ADN56290.1
KEGG: bxe:Bxe_A4164 hypothetical protein.
  
     0.670
ADN56457.1
KEGG: bxe:Bxe_A3970 hypothetical protein.
  
     0.660
Your Current Organism:
Burkholderia sp. CCGE1003
NCBI taxonomy Id: 640512
Other names: B. sp. CCGE1003
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.