STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADN57931.1KEGG: bpy:Bphyt_1661 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase. (463 aa)    
Predicted Functional Partners:
ADN57938.1
KEGG: bpy:Bphyt_1654 putative pilus assembly protein, CpaE-like protein.
 
    0.853
ADN57934.1
KEGG: bpy:Bphyt_1658 tetratricopeptide TPR_2 repeat protein.
 
    0.844
ADN57932.1
PFAM: Protein of unknown function DUF2134, membrane; KEGG: bxe:Bxe_A2791 hypothetical protein.
 
   
 0.839
ADN57936.1
Type II secretion system F domain protein; KEGG: bxe:Bxe_A2795 putative tight adherence TadB related transmembrane protein; manually curated; PFAM: Type II secretion system F domain.
  
    0.831
ADN57935.1
PFAM: Type II secretion system F domain; KEGG: bxe:Bxe_A2794 putative tight adherence TadC related transmembrane protein.
 
    0.806
ADN57933.1
KEGG: bxe:Bxe_A2792 hypothetical protein.
       0.800
ADN56326.1
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.784
ADN57937.1
PFAM: type II secretion system protein E; KEGG: bxe:Bxe_A2796 putative type II/IV secretion ATPase protein, TadA.
  
    0.783
ADN59722.1
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.783
ADN57942.1
PFAM: peptidase A24A prepilin type IV; KEGG: bpy:Bphyt_1650 peptidase A24A prepilin type IV.
 
    0.644
Your Current Organism:
Burkholderia sp. CCGE1003
NCBI taxonomy Id: 640512
Other names: B. sp. CCGE1003
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