STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_2KEGG: enc:ECL_02941 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core. (579 aa)    
Predicted Functional Partners:
ybhS
PFAM: ABC-2 type transporter; KEGG: enc:ECL_02942 putative ABC transporter membrane protein.
 
 0.997
ybhR
PFAM: ABC-2 type transporter; KEGG: enc:ECL_02943 putative ABC transporter, permease protein.
 
 0.990
AEN64014.1
UPF0194 membrane protein ybhG; KEGG: enc:ECL_02940 putative HlyD family secretion protein; HAMAP: UPF0194 membrane protein ybhG; PFAM: Secretion protein HlyD.
 
  
 0.975
rutR_1
PFAM: Transcriptional regulator, YbiH, C-terminal; Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: enc:ECL_02939 putative DNA-binding transcriptional regulator.
 
     0.873
yadH
PFAM: ABC-2 type transporter; KEGG: enc:ECL_00933 putative ABC transporter, permease protein.
 
 
 0.596
rhlE_1
DEAD/DEAH box helicase domain protein; KEGG: enc:ECL_02938 putative ATP-dependent RNA helicase RhlE; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal.
   
   0.575
AEN64016.1
Hypothetical protein.
       0.539
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.474
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.472
dinG_2
SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; Helicase-like, DEXD box c2 type; KEGG: enc:ECL_02935 ATP-dependent DNA helicase DinG.
       0.445
Your Current Organism:
Enterobacter asburiae
NCBI taxonomy Id: 640513
Other names: E. asburiae LF7a, Enterobacter asburiae LF7a, Enterobacter asburiae str. LF7a, Enterobacter asburiae strain LF7a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.