Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ynfBUPF0482 protein ynfB; KEGG: enc:ECL_02185 hypothetical protein; HAMAP: Protein of unknown function DUF1283; PFAM: Protein of unknown function DUF1283. (112 aa)    
Predicted Functional Partners:
speG_1
PFAM: GCN5-related N-acetyltransferase; KEGG: enc:ECL_02186 spermidine N1-acetyltransferase.
  
  
 0.985
bssS
KEGG: enc:ECL_02578 biofilm formation regulatory protein BssS.
  
     0.774
yidQ
PFAM: Protein of unknown function DUF1375; KEGG: enc:ECL_00014 hypothetical protein.
  
     0.773
ynfD
PFAM: Protein of unknown function DUF1161; KEGG: enc:ECL_02188 hypothetical protein.
 
     0.773
AEN64477.1
KEGG: enc:ECL_02427 putative regulatory protein.
  
     0.772
yggN
KEGG: enc:ECL_04285 hypothetical protein.
  
     0.771
yiaF_2
KEGG: enc:ECL_00212 putative outer membrane lipoprotein.
  
   
 0.770
secM
Secretion monitor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.769
AEN64378.1
PFAM: Protein of unknown function DUF1425; KEGG: enc:ECL_02532 hypothetical protein.
  
     0.769
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.769
Your Current Organism:
Enterobacter asburiae
NCBI taxonomy Id: 640513
Other names: E. asburiae LF7a, Enterobacter asburiae LF7a, Enterobacter asburiae str. LF7a, Enterobacter asburiae strain LF7a
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