STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yabJPFAM: Endoribonuclease L-PSP; KEGG: kpu:KP1_3451 hypothetical protein. (129 aa)    
Predicted Functional Partners:
pheA
Chorismate mutase; KEGG: enc:ECL_03929 bifunctional chorismate mutase/prephenate dehydratase; TIGRFAM: Chorismate mutase, gammaproteobacteria; PFAM: Prephenate dehydratase; Chorismate mutase, type II.
  
 
  0.801
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
  0.791
trpD_1
Anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glutamine amidotransferase class-I, C-terminal; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; Glutamine amidotransferase of anthranilate synthase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: enc:ECL_01728 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase.
    
 0.789
fusA_1
KEGG: enc:ECL_01886 translation elongation factor 2 (EF-2/EF-G); TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal.
    
  0.615
fusA_3
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
    
  0.615
dinG_3
SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; KEGG: enc:ECL_01495 putative ATP-dependent helicase.
       0.553
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
   0.539
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
   0.477
aroC_2
KEGG: enc:ECL_03678 chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase.
 
 
  0.468
yeaZ
Universal protein YeaZ; KEGG: enc:ECL_01496 putative peptidase; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease.
  
    0.455
Your Current Organism:
Enterobacter asburiae
NCBI taxonomy Id: 640513
Other names: E. asburiae LF7a, Enterobacter asburiae LF7a, Enterobacter asburiae str. LF7a, Enterobacter asburiae strain LF7a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.