Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yecNKEGG: enc:ECL_01429 putative inner membrane protein. (131 aa)    
Predicted Functional Partners:
cmoA_2
tRNA (cmo5U34)-methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
  
  
 0.879
yecE_2
PFAM: Protein of unknown function DUF72; KEGG: enc:ECL_01430 hypothetical protein.
     
 0.738
cmoB_2
tRNA (mo5U34)-methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
     
 0.700
yecD_1
PFAM: Isochorismatase-like; KEGG: enc:ECL_01431 hypothetical protein.
     
 0.662
wzzE_2
PFAM: Lipopolysaccharide biosynthesis; KEGG: enc:ECL_05000 lipopolysaccharide biosynthesis protein WzzE.
  
     0.650
ybaP
GumN family protein; PFAM: GumN; KEGG: ent:Ent638_0961 GumN family protein.
  
     0.551
yiiR
PFAM: Protein of unknown function DUF805; KEGG: enc:ECL_05054 hypothetical protein.
  
     0.549
wzyE
ECA polymerase; Probably involved in the polymerization of enterobacterial common antigen (ECA) trisaccharide repeat units; Belongs to the WzyE family.
  
     0.545
nudB
PFAM: NUDIX hydrolase domain; KEGG: esa:ESA_01377 dATP pyrophosphohydrolase.
 
     0.513
AEN63960.1
Cyd operon protein YbgE; KEGG: enc:ECL_02996 hypothetical protein; TIGRFAM: Cyd operon protein YbgE; PFAM: Cyd operon protein YbgE.
  
     0.507
Your Current Organism:
Enterobacter asburiae
NCBI taxonomy Id: 640513
Other names: E. asburiae LF7a, Enterobacter asburiae LF7a, Enterobacter asburiae str. LF7a, Enterobacter asburiae strain LF7a
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