STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhbNLipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. (184 aa)    
Predicted Functional Partners:
lptC
Protein of unknown function DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
 
 
 0.997
lptB_4
ABC transporter related protein; KEGG: enc:ECL_04583 lipopolysaccharide export system ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
  
 
 0.997
lptD
LPS-assembly protein lptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.971
lptF_1
PFAM: Permease YjgP/YjgQ, predicted; KEGG: enc:ECL_04593 permease YjgP/YjgQ family protein.
 
  
 0.953
lptG
PFAM: Permease YjgP/YjgQ, predicted; KEGG: enc:ECL_04592 lipopolysaccharide export system permease protein LptG.
    
 0.943
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
    0.844
flgC
KEGG: enc:ECL_02564 flagellar basal body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal; Belongs to the flagella basal body rod proteins family.
    
   0.840
kdsD
KpsF/GutQ family protein; KEGG: enc:ECL_04579 D-arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core.
  
    0.800
yrbG
Na+/Ca+ antiporter, CaCA family; KEGG: enc:ECL_04578 putative calcium/sodium:proton antiporter; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger membrane region.
     
 0.769
rpoN
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.744
Your Current Organism:
Enterobacter asburiae
NCBI taxonomy Id: 640513
Other names: E. asburiae LF7a, Enterobacter asburiae LF7a, Enterobacter asburiae str. LF7a, Enterobacter asburiae strain LF7a
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