STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB58862.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (210 aa)    
Predicted Functional Partners:
SEB58836.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.969
SEC06338.1
Signal transduction histidine kinase.
 
  0.864
SEB50994.1
Signal transduction histidine kinase.
  
  0.862
SEC57453.1
Signal transduction histidine kinase.
  
  0.861
SEB82327.1
Signal transduction histidine kinase.
  
  0.858
SEB77388.1
Two-component system, NarL family, sensor histidine kinase DesK.
  
  0.853
SEC17973.1
Signal transduction histidine kinase.
 
  0.823
SEB81057.1
Signal transduction histidine kinase.
 
  0.816
SEB85416.1
Histidine kinase.
 
 0.781
SEB68974.1
Signal transduction histidine kinase.
 
 0.748
Your Current Organism:
Microbacterium humi
NCBI taxonomy Id: 640635
Other names: CCM 7687, DSM 21799, M. humi, Microbacterium humi Young et al. 2010, Microbacterium sp. CC-012309, strain CC-012309, strain CC-12309
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