STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB92359.1PAS fold-containing protein. (545 aa)    
Predicted Functional Partners:
SEB92138.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.910
SEB92475.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  0.896
SEB92406.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  
 0.887
SEB98270.1
Two-component system, OmpR family, response regulator.
 
  0.884
SEB99805.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
 
  0.884
SEB97602.1
Two-component system, OmpR family, response regulator RegX3.
 
  0.879
SEC01957.1
Two-component system, OmpR family, response regulator MtrA.
 
  0.878
SEB48129.1
Transcriptional regulatory protein, C terminal.
 
  0.866
SEB42418.1
Two-component system, OmpR family, response regulator.
 
  0.864
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
    
  0.779
Your Current Organism:
Microbacterium humi
NCBI taxonomy Id: 640635
Other names: CCM 7687, DSM 21799, M. humi, Microbacterium humi Young et al. 2010, Microbacterium sp. CC-012309, strain CC-012309, strain CC-12309
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.