STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC49535.1Hypothetical protein. (139 aa)    
Predicted Functional Partners:
SEC49495.1
Plasmid stability protein.
 
 
   0.966
SEB34914.1
Plasmid stability protein.
 
 
   0.858
SEB35023.1
Plasmid stability protein.
 
 
   0.858
SEB61894.1
Antitoxin of type II TA system, VapB.
 
 
   0.615
SEB48535.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
   0.577
SEB69619.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
   
 0.577
SEC49579.1
DUF218 domain-containing protein.
       0.524
SEC49872.1
Antitoxin of type II TA system, VapB; Manually curated.
 
 
   0.518
SEB63992.1
Acetyltransferase (GNAT) domain-containing protein; Manually curated.
  
     0.461
SEC03259.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
   0.414
Your Current Organism:
Microbacterium humi
NCBI taxonomy Id: 640635
Other names: CCM 7687, DSM 21799, M. humi, Microbacterium humi Young et al. 2010, Microbacterium sp. CC-012309, strain CC-012309, strain CC-12309
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.