STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VNG_0437CConserved hypothetical protein; Vng0437c. (426 aa)    
Predicted Functional Partners:
mcmA1
methylmalonyl-CoA mutase, subunit alpha; McmA1.
  
    0.718
dppF
Dipeptide ABC transporter ATP-binding; DppF.
  
    0.693
dapA
Dihydrodipicolinate synthase; DapA; Belongs to the DapA family.
 
   
 0.668
lysC
Aspartokinase II alpha subunit; LysC; Belongs to the aspartokinase family.
 
   
 0.626
asd
Aspartate-semialdehyde dehydrogenase; Asd.
  
  
 0.560
nhaC1
Na+/H+ antiporter; NhaC1.
       0.557
VNG_0435H
Hypothetical protein; Vng0435h.
       0.546
VNG_0361C
Conserved hypothetical protein; Vng0361c.
  
  
 0.463
thyX
Conserved hypothetical protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
  
    0.457
nifU
Nitrogen fixation protein; NifU.
     
 0.451
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.