STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VNG_0600CConserved hypothetical protein; Vng0600c. (361 aa)    
Predicted Functional Partners:
VNG_0598C
Conserved hypothetical protein; Vng0598c.
 
   
0.962
rnp4
Conserved hypothetical protein; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
  
    0.670
rfbU1
LPS biosynthesis; RfbU1.
  
     0.627
VNG_1418C
Conserved hypothetical protein; Vng1418c.
 
 
 
 0.603
udg1
UDP-glucose dehydrogenase; Udg1.
 
  
 0.587
ugd
UDP-glucose dehydrogenase; Ugd.
 
  
 0.585
VNG_0601H
Hypothetical protein; Vng0601h.
       0.524
VNG_0011C
Conserved hypothetical protein; Vng0011c.
 
  
 0.520
uae
UDP-N-acetylglucosamine 2-epimerase; Uae.
  
  
 0.453
VNG_0050C
Conserved hypothetical protein; Vng0050c.
  
  
 0.439
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.