STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pan1Membrane protein; Pan1. (379 aa)    
Predicted Functional Partners:
nirJ
Heme biosynthesis protein; NirJ.
  
  
 0.944
hcpD
Halocyanin precursor-like; HcpD.
  
 
 0.942
cpx
Heavy-metal transporting CPx-type ATPase; Cpx.
 
  
 0.820
pqqE
Coenzyme PQQ synthesis protein; PqqE.
  
  
 0.817
VNG_1183H
Hypothetical protein; Vng1183h.
     
 0.811
hcpB
Halocyanin precursor-like; HcpB.
  
 
 0.770
araL
Unknown L-arabinose operon protein; AraL.
   
  
 0.735
coxB2
Cytochrome c oxidase subunit II; CoxB2.
  
  
 0.711
cctA
Thermosome subunit alpha; Molecular chaperone; binds unfolded polypeptides in vitro, and has a weak ATPase activity; Belongs to the TCP-1 chaperonin family.
      
 0.687
VNG_2199H
Hypothetical protein; Vng2199h.
 
   
 0.643
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.