STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VNG_1237CConserved hypothetical protein; Vng1237c. (160 aa)    
Predicted Functional Partners:
VNG_1179C
Conserved hypothetical protein; Vng1179c.
  
   
 0.860
trh4
Transcription regulator; Trh4.
  
   
 0.782
trh3
Transcription regulator; Trh3.
  
   
 0.774
trh6
Transcription regulator; Trh6.
  
   
 0.763
trh7
Transcription regulator; Trh7.
      
 0.652
nhaC1
Na+/H+ antiporter; NhaC1.
      
 0.641
nhaC2
Na+/H+ antiporter; NhaC2.
      
 0.641
tyrA
Conserved hypothetical protein; Vng1235c.
  
    0.599
VNG_1236C
Conserved hypothetical protein; Vng1236c.
       0.592
VNG_1234C
Conserved hypothetical protein; Vng1234c.
       0.426
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.