STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
blpBacterio-opsin linked product; Blp. (142 aa)    
Predicted Functional Partners:
brp
Bacteriorhodopsin related protein; Is required for retinal production and bacteriorhodopsin biogenesis. Probably catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans- retinal.
   
  
 0.882
crtB1
Phytoene synthase; CrtB1.
  
  
 0.825
cdc48a
Cell division cycle protein; Cdc48a.
  
  
 0.761
VNG_1459H
Hypothetical protein; Vng1459h.
     
 0.737
blh
Brp-like homolog; Appears to partially substitute for Brp function in retinal biosynthesis during bacteriorhodopsin production. Probably catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal.
  
  
 0.709
brz
Hypothetical protein; Activates transcription of bacteriorhodopsin (bop) and phytoene synthase (crtB1). May interact with DNA or RNA via the zinc finger motif (By similarity).
      
 0.703
bop
Bacteriorhodopsin; Light-driven proton pump.
   
  
 0.687
boa4
Bacterio-opsin activator-like protein; Boa4.
   
  
 0.659
boa2
Bacterio-opsin activator-like protein; Boa2.
      
 0.657
bap
Hypothetical protein; Vng1468h.
      
 0.589
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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