Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VNG_1663CConserved hypothetical protein; Vng1663c. (380 aa)    
Predicted Functional Partners:
VNG_2351C
Conserved hypothetical protein; Vng2351c.
 
    0.889
gul2
Inosine-5'-monophosphate dehydrogenase-like; Gul2.
   
    0.820
VNG_1536C
Conserved hypothetical protein; Vng1536c.
  
    0.801
rps2p
30S ribosomal protein S2P; Rps2p; Belongs to the universal ribosomal protein uS2 family.
 
   0.681
VNG_1658C
Conserved hypothetical protein; Vng1658c.
  
    0.666
rpl32e
50S ribosomal protein L32E; Rpl32e; Belongs to the eukaryotic ribosomal protein eL32 family.
  
 
   0.660
rps28e
30S ribosomal protein S28E; Rps28e; Belongs to the eukaryotic ribosomal protein eS28 family.
  
   0.652
imd2
Inosine-5'-monophosphate dehydrogenase; Imd2.
   
    0.644
rpl37e
50S ribosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
 
 
   0.630
rpl30p
50S ribosomal protein L30P; Rpl30p.
  
   0.624
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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