STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cruFConserved hypothetical protein; Vng1681c. (279 aa)    
Predicted Functional Partners:
lye
Conserved hypothetical protein; Involved in bacterioruberin biosynthesis. Catalyzes the addition of 2 isoprene units to lycopene to generate tetrahydrobisanhydrobacterioruberin; Belongs to the UbiA prenyltransferase family.
 
   
 0.993
crtI1
Phytoene dehydrogenase; CrtI1.
 
   
 0.970
mch
N5,N10-methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT.
       0.628
alkA
3-methyladenine DNA glycosylase; AlkA.
      
 0.524
VNG_1687C
Conserved hypothetical protein; Vng1687c.
       0.491
crtI2
Phytoene dehydrogenase; CrtI2.
 
   
 0.485
uvrD
Repair helicase; UvrD.
  
   
 0.483
crtB2
Phytoene synthase; CrtB2.
 
   
 0.477
VNG_0622H
Hypothetical protein; Vng0622h.
 
     0.475
crtB1
Phytoene synthase; CrtB1.
 
   
 0.459
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.