Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ywaD2Hypothetical protein; Vng2002h. (441 aa)    
Predicted Functional Partners:
yjbG
Oligopeptidase; YjbG.
     
 0.693
ansA-2
Conserved hypothetical protein; Vng1872c.
  
  
 0.506
atpI
H+-transporting ATP synthase subunit I; Produces ATP from ADP in the presence of a proton gradient across the membrane; Belongs to the V-ATPase 116 kDa subunit family.
   
  0.476
atpA
H+-transporting ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit (By similarity); Belongs to the ATPase alpha/beta chains family.
   
  0.475
atpC
H+-transporting ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
  0.466
atpD
H+-transporting ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
  0.465
atpB
H+-transporting ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.
  
  0.462
atpE
H+-transporting ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
  0.462
mak
MAPK-activated protein kinase; Mak.
    
 0.451
gbp3
GTP-binding protein homolog; Gbp3.
    
 0.434
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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