STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VNG_2168CConserved hypothetical protein; Vng2168c; Belongs to the peptidase M50B family. (390 aa)    
Predicted Functional Partners:
dbp
DNA binding protein eukaryotic-like; Dbp.
 
     0.693
gbp3
GTP-binding protein homolog; Gbp3.
   
 0.616
adh1
Alcohol dehydrogenase; Adh1.
       0.603
merA
mercury(II) reductase; MerA; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
   
   0.535
lpdA
Dihydrolipoamide dehydrogenase; LpdA.
   
   0.535
VNG_2170H
Hypothetical protein; Vng2170h.
       0.488
VNG_0429H
Hypothetical protein; Vng0429h.
   
 
 0.444
guaAb
GMP synthase subunit B; Catalyzes the synthesis of GMP from XMP.
  
 
 0.441
VNG_2582H
Hypothetical protein; Vng2582h.
    
 
 0.434
VNG_0778C
Conserved hypothetical protein; Vng0778c.
   
 
 0.418
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.