STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykfDOligopeptide ABC transporter ATP-binding; YkfD. (445 aa)    
Predicted Functional Partners:
appC
Oligopeptide transport permease protein; AppC.
 
 0.981
dppC1
Dipeptide ABC transporter permease; DppC1.
 
 0.980
oppD2
Oligopeptide ABC transporter; OppD2.
 
   
0.974
dppC2
Dipeptide ABC transporter permease; DppC2.
 
 0.971
dppB1
Dipeptide ABC transporter permease; DppB1.
  
 0.952
dppA
Dipeptide ABC transporter dipeptide-binding; DppA.
 
 
 0.943
appB
Oligopeptide ABC permease; AppB.
  
 0.798
VNG_2342H
Hypothetical protein; Vng2342h.
       0.791
dppB2
Dipeptide ABC transporter permease; DppB2.
  
 0.781
VNG_2341H
Hypothetical protein; Vng2341h.
       0.709
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.