STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nosF1Copper transport ATP-binding protein; NosF1. (304 aa)    
Predicted Functional Partners:
nosY
Nitrite/nitrate reduction protein; NosY.
 
 
 0.978
cbiO1
Cobalt transport ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
 
    
0.912
dppB2
Dipeptide ABC transporter permease; DppB2.
  
  
 0.746
dppC1
Dipeptide ABC transporter permease; DppC1.
  
  
 0.741
dppC2
Dipeptide ABC transporter permease; DppC2.
  
  
 0.739
atpI
H+-transporting ATP synthase subunit I; Produces ATP from ADP in the presence of a proton gradient across the membrane; Belongs to the V-ATPase 116 kDa subunit family.
   
  
 0.713
nifU
Nitrogen fixation protein; NifU.
  
  
 0.692
dppD
Dipeptide ABC transporter ATP-binding; DppD.
  
  
 0.675
trp1
ABC transport protein; Trp1.
 
0.671
VNG_2379H
Hypothetical protein; Vng2379h.
       0.592
Your Current Organism:
Halobacterium salinarum
NCBI taxonomy Id: 64091
Other names: H. salinarum NRC-1, Halobacterium halobium NRC-1, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.