STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CZR05587.1Hypothetical protein. (54 aa)    
Predicted Functional Partners:
rnc
Ribonuclease iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.773
smc
Smcs flexible hinge; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.668
CZR05616.1
Cof protein.
       0.637
CZR05577.1
Hypothetical protein.
       0.615
CZR05567.1
Hypothetical protein.
       0.584
ftsY
Signal recognition particle srp54 subunit helical bundle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.551
CZR05543.1
Abc transporter; Belongs to the ABC transporter superfamily.
       0.539
CZR05550.1
Abc transporter; Belongs to the ABC transporter superfamily.
       0.539
CZR05559.1
Hypothetical protein.
       0.539
Your Current Organism:
Trichococcus ilyis
NCBI taxonomy Id: 640938
Other names: DSM 22150, JCM 31247, T. ilyis, Trichococcus ilyis Strepis et al. 2016, Trichococcus sp. DSM 22150, Trichococcus sp. R210, strain R210
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.