STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CZR06594.1Hypothetical protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. (672 aa)    
Predicted Functional Partners:
rplI
Ribosomal protein l9 bacteria/chloroplast; Binds to the 23S rRNA.
 
  
 0.977
CZR06611.1
Hypothetical protein.
       0.741
CZR06619.1
Dna helicase dnab type; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
  
 0.719
tmcAL
High nucleotidyl transferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
     0.634
polC
Dna polymerase iii polc-type n-terminus i; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
     0.595
TR210_377
Cams sex pheromone cam373.
  
     0.554
CZR03639.1
Veg.
 
    0.527
CZQ99369.1
Hypothetical protein.
  
  
 0.524
CZQ98239.1
Polysaccharide biosynthesis protein.
  
    0.521
purA
Adenylosuccinate synthase active site; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
       0.491
Your Current Organism:
Trichococcus ilyis
NCBI taxonomy Id: 640938
Other names: DSM 22150, JCM 31247, T. ilyis, Trichococcus ilyis Strepis et al. 2016, Trichococcus sp. DSM 22150, Trichococcus sp. R210, strain R210
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