STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TR210_638Hydroxymethylglutaryl-coa synthase prokaryotic. (392 aa)    
Predicted Functional Partners:
TR210_637
Hydroxymethylglutaryl-coa reductase class i/ii; Belongs to the HMG-CoA reductase family.
 
 0.999
TR210_639
Thiolase active site; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.994
TR210_939
Thiolase active site; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.990
TR210_805
Thiolases signature 2; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.989
TR210_535
Diphosphomevalonate decarboxylase.
 
 
 0.931
TR210_534
Mevalonate/galactokinase.
 
 
 0.915
TR210_536
Mevalonate/galactokinase.
 
 
 0.914
TR210_58
Pyruvate ferredoxin/flavodoxin oxidoreductase.
     
 0.881
CZR04782.1
Citrate synthase active site; Belongs to the citrate synthase family.
    
 0.877
fni
Fmn-dependent dehydrogenase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
 
 0.876
Your Current Organism:
Trichococcus ilyis
NCBI taxonomy Id: 640938
Other names: DSM 22150, JCM 31247, T. ilyis, Trichococcus ilyis Strepis et al. 2016, Trichococcus sp. DSM 22150, Trichococcus sp. R210, strain R210
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