Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD41581.1 | SFD44547.1 | SAMN05216238_101238 | SAMN05216238_101375 | FdrA protein. | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | 0.864 |
SFD41581.1 | SFD52321.1 | SAMN05216238_101238 | SAMN05216238_10264 | FdrA protein. | methylmalonyl-CoA epimerase. | 0.894 |
SFD41581.1 | SFD59048.1 | SAMN05216238_101238 | SAMN05216238_102319 | FdrA protein. | Succinate dehydrogenase subunit B. | 0.864 |
SFD41581.1 | SFD59064.1 | SAMN05216238_101238 | SAMN05216238_102320 | FdrA protein. | Succinate dehydrogenase subunit A. | 0.885 |
SFD41581.1 | SFD59086.1 | SAMN05216238_101238 | SAMN05216238_102321 | FdrA protein. | Succinate dehydrogenase subunit C. | 0.868 |
SFD41581.1 | SFD77649.1 | SAMN05216238_101238 | SAMN05216238_10437 | FdrA protein. | Glycine/D-amino acid oxidase. | 0.868 |
SFD41581.1 | icmF | SAMN05216238_101238 | SAMN05216238_10858 | FdrA protein. | methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly. | 0.952 |
SFD41581.1 | mdh | SAMN05216238_101238 | SAMN05216238_1147 | FdrA protein. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.858 |
SFD41581.1 | odhA | SAMN05216238_101238 | SAMN05216238_10750 | FdrA protein. | 2-oxoglutarate dehydrogenase E1 component; E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). | 0.851 |
SFD41581.1 | sucC | SAMN05216238_101238 | SAMN05216238_104176 | FdrA protein. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.990 |
SFD44547.1 | SFD41581.1 | SAMN05216238_101375 | SAMN05216238_101238 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | FdrA protein. | 0.864 |
SFD44547.1 | SFD52321.1 | SAMN05216238_101375 | SAMN05216238_10264 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | methylmalonyl-CoA epimerase. | 0.614 |
SFD44547.1 | SFD59064.1 | SAMN05216238_101375 | SAMN05216238_102320 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | Succinate dehydrogenase subunit A. | 0.997 |
SFD44547.1 | SFD59086.1 | SAMN05216238_101375 | SAMN05216238_102321 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | Succinate dehydrogenase subunit C. | 0.997 |
SFD44547.1 | SFD77649.1 | SAMN05216238_101375 | SAMN05216238_10437 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | Glycine/D-amino acid oxidase. | 0.883 |
SFD44547.1 | icmF | SAMN05216238_101375 | SAMN05216238_10858 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly. | 0.913 |
SFD44547.1 | mdh | SAMN05216238_101375 | SAMN05216238_1147 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.879 |
SFD44547.1 | odhA | SAMN05216238_101375 | SAMN05216238_10750 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | 2-oxoglutarate dehydrogenase E1 component; E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). | 0.844 |
SFD44547.1 | sucC | SAMN05216238_101375 | SAMN05216238_104176 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.931 |
SFD52321.1 | SFD41581.1 | SAMN05216238_10264 | SAMN05216238_101238 | methylmalonyl-CoA epimerase. | FdrA protein. | 0.894 |
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