STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD42168.1Hypothetical protein. (538 aa)    
Predicted Functional Partners:
SFD61338.1
Type I restriction enzyme, R subunit.
 
   0.517
SFD61365.1
Protein of unknown function.
 
   0.514
SFE02527.1
Type I restriction enzyme, R subunit.
 
   0.513
SFE02553.1
Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   0.513
SFD42208.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
     
 0.485
SFD42186.1
Hypothetical protein.
       0.458
SFD42150.1
DnaD and phage-associated domain-containing protein.
       0.454
SFE02616.1
Type I restriction enzyme M protein.
 
     0.445
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.