Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD37560.1 | SFD45032.1 | SAMN05216238_10149 | SAMN05216238_101395 | Cytochrome c oxidase subunit 1. | Cytochrome c oxidase subunit 2. | 0.886 |
SFD37560.1 | SFD83084.1 | SAMN05216238_10149 | SAMN05216238_104288 | Cytochrome c oxidase subunit 1. | Cytochrome c oxidase subunit 4. | 0.949 |
SFD37560.1 | SFD83102.1 | SAMN05216238_10149 | SAMN05216238_104289 | Cytochrome c oxidase subunit 1. | Cytochrome c oxidase subunit 3. | 0.974 |
SFD37560.1 | SFD83120.1 | SAMN05216238_10149 | SAMN05216238_104290 | Cytochrome c oxidase subunit 1. | Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.403 |
SFD37560.1 | SFD83139.1 | SAMN05216238_10149 | SAMN05216238_104291 | Cytochrome c oxidase subunit 1. | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.999 |
SFD37560.1 | SFE02241.1 | SAMN05216238_10149 | SAMN05216238_10799 | Cytochrome c oxidase subunit 1. | Cytochrome aa3 quinol oxidase subunit 3. | 0.965 |
SFD37560.1 | SFE02264.1 | SAMN05216238_10149 | SAMN05216238_107100 | Cytochrome c oxidase subunit 1. | Cytochrome aa3 quinol oxidase subunit 4. | 0.907 |
SFD37560.1 | SFE46028.1 | SAMN05216238_10149 | SAMN05216238_11722 | Cytochrome c oxidase subunit 1. | Menaquinol-cytochrome c reductase cytochrome b subunit. | 0.953 |
SFD37560.1 | SFE46057.1 | SAMN05216238_10149 | SAMN05216238_11723 | Cytochrome c oxidase subunit 1. | Menaquinol-cytochrome c reductase cytochrome b/c subunit. | 0.958 |
SFD45032.1 | SFD37560.1 | SAMN05216238_101395 | SAMN05216238_10149 | Cytochrome c oxidase subunit 2. | Cytochrome c oxidase subunit 1. | 0.886 |
SFD45032.1 | SFD83084.1 | SAMN05216238_101395 | SAMN05216238_104288 | Cytochrome c oxidase subunit 2. | Cytochrome c oxidase subunit 4. | 0.948 |
SFD45032.1 | SFD83102.1 | SAMN05216238_101395 | SAMN05216238_104289 | Cytochrome c oxidase subunit 2. | Cytochrome c oxidase subunit 3. | 0.960 |
SFD45032.1 | SFD83120.1 | SAMN05216238_101395 | SAMN05216238_104290 | Cytochrome c oxidase subunit 2. | Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.858 |
SFD45032.1 | SFD83139.1 | SAMN05216238_101395 | SAMN05216238_104291 | Cytochrome c oxidase subunit 2. | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.930 |
SFD45032.1 | SFD96578.1 | SAMN05216238_101395 | SAMN05216238_106188 | Cytochrome c oxidase subunit 2. | Cytochrome c oxidase subunit 1. | 0.871 |
SFD45032.1 | SFE02241.1 | SAMN05216238_101395 | SAMN05216238_10799 | Cytochrome c oxidase subunit 2. | Cytochrome aa3 quinol oxidase subunit 3. | 0.960 |
SFD45032.1 | SFE02264.1 | SAMN05216238_101395 | SAMN05216238_107100 | Cytochrome c oxidase subunit 2. | Cytochrome aa3 quinol oxidase subunit 4. | 0.948 |
SFD45032.1 | SFE46028.1 | SAMN05216238_101395 | SAMN05216238_11722 | Cytochrome c oxidase subunit 2. | Menaquinol-cytochrome c reductase cytochrome b subunit. | 0.942 |
SFD45032.1 | SFE46057.1 | SAMN05216238_101395 | SAMN05216238_11723 | Cytochrome c oxidase subunit 2. | Menaquinol-cytochrome c reductase cytochrome b/c subunit. | 0.942 |
SFD83084.1 | SFD37560.1 | SAMN05216238_104288 | SAMN05216238_10149 | Cytochrome c oxidase subunit 4. | Cytochrome c oxidase subunit 1. | 0.949 |
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