STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD53768.1Type II secretion system protein C (GspC); Required for transformation and DNA binding. (102 aa)    
Predicted Functional Partners:
SFD53847.1
Hypothetical protein.
  
 
 0.987
SFD53734.1
Competence-related pilin export protein ComGB.
 
  
 0.978
SFD53879.1
Competence protein ComGF.
  
  
 0.970
SFD53702.1
Competence-related pilin export protein ComGA.
  
  
 0.968
SFD96991.1
Competence protein ComFA.
  
  
 0.864
SFD55923.1
Competence protein ComEC.
   
  
 0.831
SFD53811.1
Competence protein ComGD.
       0.800
SFD60867.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A.
 
  
 0.792
SFD53907.1
ComG operon protein 7.
       0.786
SFD55987.1
Competence protein ComEA.
   
  
 0.769
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.