STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD53847.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
SFD53768.1
Type II secretion system protein C (GspC); Required for transformation and DNA binding.
  
 
 0.987
SFD53702.1
Competence-related pilin export protein ComGA.
  
 0.986
SFD53734.1
Competence-related pilin export protein ComGB.
  
  
 0.986
SFD53879.1
Competence protein ComGF.
  
  
 0.970
SFD53811.1
Competence protein ComGD.
  
 
 0.912
SFD96991.1
Competence protein ComFA.
   
  
 0.833
SFD55923.1
Competence protein ComEC.
  
  
 0.806
SFD53907.1
ComG operon protein 7.
       0.785
SFD60867.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A.
  
  
 0.754
SFD55987.1
Competence protein ComEA.
  
  
 0.720
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.