STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD54202.1Rhomboid family peptidase. Serine peptidase. MEROPS family S54. (519 aa)    
Predicted Functional Partners:
SFE04818.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.934
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.931
SFD54272.1
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.802
SFE30455.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
  
 0.720
SFE45902.1
Tetratricopeptide repeat-containing protein.
 
  
 0.669
SFD81187.1
YlqD protein.
  
     0.644
SFE45932.1
Uncharacterized protein YpiB, UPF0302 family; Belongs to the UPF0302 family.
  
    0.640
SFD57208.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.616
SFD66239.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.616
SFD41007.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.608
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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