STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD58201.1DNA replication and repair protein RadC; Belongs to the UPF0758 family. (229 aa)    
Predicted Functional Partners:
SFD58155.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
  
 0.902
SFD96977.1
Competence protein ComFC.
  
    0.796
SFD58180.1
Rod shape-determining protein MreB.
  
  
 0.689
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
 
   
 0.645
cinA
Competence/damage-inducible protein cinA; Belongs to the CinA family.
     
 0.626
SFD58132.1
Rod shape-determining protein MreD.
  
  
 0.594
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
   
 0.578
SFD80906.1
DNA processing protein.
  
  
 0.566
SFD55923.1
Competence protein ComEC.
  
  
 0.542
SFD52723.1
DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
   
 0.534
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.