Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD60298.1 | SFD60324.1 | SAMN05216238_102374 | SAMN05216238_102375 | TIGR00659 family protein. | Holin-like protein. | 0.994 |
SFD60298.1 | SFD60347.1 | SAMN05216238_102374 | SAMN05216238_102376 | TIGR00659 family protein. | PAS/PAC sensor signal transduction histidine kinase. | 0.442 |
SFD60298.1 | SFD60373.1 | SAMN05216238_102374 | SAMN05216238_102377 | TIGR00659 family protein. | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. | 0.442 |
SFD60298.1 | SFD60399.1 | SAMN05216238_102374 | SAMN05216238_102378 | TIGR00659 family protein. | Acyl dehydratase. | 0.401 |
SFD60298.1 | SFD68556.1 | SAMN05216238_102374 | SAMN05216238_103148 | TIGR00659 family protein. | Two component transcriptional regulator, LytTR family. | 0.579 |
SFD60298.1 | coaE | SAMN05216238_102374 | SAMN05216238_102371 | TIGR00659 family protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.534 |
SFD60298.1 | mutM | SAMN05216238_102374 | SAMN05216238_102372 | TIGR00659 family protein. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.506 |
SFD60298.1 | polA | SAMN05216238_102374 | SAMN05216238_102373 | TIGR00659 family protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.570 |
SFD60324.1 | SFD60298.1 | SAMN05216238_102375 | SAMN05216238_102374 | Holin-like protein. | TIGR00659 family protein. | 0.994 |
SFD60324.1 | SFD60347.1 | SAMN05216238_102375 | SAMN05216238_102376 | Holin-like protein. | PAS/PAC sensor signal transduction histidine kinase. | 0.445 |
SFD60324.1 | SFD60373.1 | SAMN05216238_102375 | SAMN05216238_102377 | Holin-like protein. | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. | 0.442 |
SFD60324.1 | coaE | SAMN05216238_102375 | SAMN05216238_102371 | Holin-like protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.534 |
SFD60324.1 | mutM | SAMN05216238_102375 | SAMN05216238_102372 | Holin-like protein. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.506 |
SFD60324.1 | polA | SAMN05216238_102375 | SAMN05216238_102373 | Holin-like protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.570 |
SFD60347.1 | SFD60298.1 | SAMN05216238_102376 | SAMN05216238_102374 | PAS/PAC sensor signal transduction histidine kinase. | TIGR00659 family protein. | 0.442 |
SFD60347.1 | SFD60324.1 | SAMN05216238_102376 | SAMN05216238_102375 | PAS/PAC sensor signal transduction histidine kinase. | Holin-like protein. | 0.445 |
SFD60347.1 | SFD60373.1 | SAMN05216238_102376 | SAMN05216238_102377 | PAS/PAC sensor signal transduction histidine kinase. | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. | 0.996 |
SFD60347.1 | SFD60399.1 | SAMN05216238_102376 | SAMN05216238_102378 | PAS/PAC sensor signal transduction histidine kinase. | Acyl dehydratase. | 0.540 |
SFD60347.1 | polA | SAMN05216238_102376 | SAMN05216238_102373 | PAS/PAC sensor signal transduction histidine kinase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.447 |
SFD60373.1 | SFD60298.1 | SAMN05216238_102377 | SAMN05216238_102374 | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. | TIGR00659 family protein. | 0.442 |
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