Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD67771.1 | SFD67790.1 | SAMN05216238_103113 | SAMN05216238_103114 | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | Hypothetical protein. | 0.423 |
SFD67771.1 | SFD90174.1 | SAMN05216238_103113 | SAMN05216238_105210 | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | phenylacetate-CoA ligase. | 0.442 |
SFD67771.1 | menB | SAMN05216238_103113 | SAMN05216238_10621 | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | 1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | 0.434 |
SFD67771.1 | plsX | SAMN05216238_103113 | SAMN05216238_104200 | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | Phosphate:acyl-[acyl carrier protein] acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA. | 0.465 |
SFD67771.1 | purA | SAMN05216238_103113 | SAMN05216238_103230 | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.402 |
SFD67790.1 | SFD67771.1 | SAMN05216238_103114 | SAMN05216238_103113 | Hypothetical protein. | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | 0.423 |
SFD90174.1 | SFD67771.1 | SAMN05216238_105210 | SAMN05216238_103113 | phenylacetate-CoA ligase. | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | 0.442 |
menB | SFD67771.1 | SAMN05216238_10621 | SAMN05216238_103113 | 1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | 0.434 |
plsX | SFD67771.1 | SAMN05216238_104200 | SAMN05216238_103113 | Phosphate:acyl-[acyl carrier protein] acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA. | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | 0.465 |
purA | SFD67771.1 | SAMN05216238_103230 | SAMN05216238_103113 | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | Acyl-coenzyme A thioesterase PaaI, contains HGG motif. | 0.402 |