STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD68808.1Hypothetical protein. (244 aa)    
Predicted Functional Partners:
SFD68846.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.942
SFD68825.1
Hypothetical protein.
 
  
 
0.909
SFD68866.1
Signal transduction histidine kinase.
 
     0.895
SFD68888.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.861
SFD68774.1
Pantothenate kinase.
       0.508
SFD68792.1
Hypothetical protein.
       0.508
SFD59321.1
Putative membrane protein.
  
     0.449
SFD41965.1
Protein of unknown function.
  
     0.435
SFD41983.1
DNA-binding transcriptional regulator, PadR family.
  
     0.429
SFE16250.1
Glycosyl transferases group 1.
  
    0.429
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.