STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD68888.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (222 aa)    
Predicted Functional Partners:
SFD68866.1
Signal transduction histidine kinase.
 
 0.979
SFE04818.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.912
SFE35178.1
Hypothetical protein.
 0.877
SFD80399.1
Flagellar motor switch protein FliN/FliY.
   
 0.864
SFD68825.1
Hypothetical protein.
 
     0.863
SFD68808.1
Hypothetical protein.
 
     0.861
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.831
SFD60492.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.826
SFD60347.1
PAS/PAC sensor signal transduction histidine kinase.
 0.810
SFD88190.1
GAF domain-containing protein.
   
 0.800
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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