STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspHSmall acid-soluble spore protein H (minor); Belongs to the SspH family. (61 aa)    
Predicted Functional Partners:
SFD44122.1
MotA/TolQ/ExbB proton channel family protein.
  
     0.741
SFD44140.1
Chemotaxis protein MotB.
  
     0.677
SFD38420.1
Hypothetical protein.
  
     0.582
SFD69209.1
Uncharacterized protein, YkwD family.
       0.547
SFE24272.1
Hypothetical protein.
  
     0.540
SFD83401.1
Hypothetical protein.
  
     0.528
SFE34182.1
Protein of unknown function.
  
     0.526
SFD69151.1
Sugar phosphate permease.
       0.520
SFE17356.1
Hypothetical protein.
  
     0.516
SFE22129.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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