STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD65841.1TRAP transporter, 4TM/12TM fusion protein. (725 aa)    
Predicted Functional Partners:
SFD65885.1
Hypothetical protein.
 
    0.927
SFD65863.1
Hypothetical protein.
 
    0.702
SFD90346.1
Putative tricarboxylic transport membrane protein.
  
     0.541
SFD90308.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
  
     0.536
SFD87326.1
Putative tricarboxylic transport membrane protein.
  
     0.536
SFE38133.1
Putative tricarboxylic transport membrane protein.
  
     0.525
SFD90125.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.521
SFD65819.1
Nitronate monooxygenase.
       0.506
SFD87289.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
  
     0.474
SFD87154.1
Tripartite tricarboxylate transporter family receptor.
  
     0.407
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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