STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD72572.1Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development). (275 aa)    
Predicted Functional Partners:
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.876
SFD72540.1
DNA polymerase III, delta prime subunit.
  
   0.822
SFD72520.1
Hypothetical protein.
  
  
 0.805
SFD72605.1
Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
    0.715
SFD72495.1
Uncharacterized protein YaaQ.
  
    0.663
SFD82918.1
Cell fate regulator YlbF, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family.
 
   
 0.630
fliE
Flagellar hook-basal body complex protein FliE.
   
   0.580
SFD80528.1
Flagellar basal-body rod modification protein FlgD.
    
   0.577
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.575
SFD72454.1
Lysine decarboxylase.
  
    0.560
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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