STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD83882.1Uncharacterised protein family (UPF0180). (81 aa)    
Predicted Functional Partners:
SFD61137.1
Protein of unknown function.
  
     0.676
SFD54522.1
MFS transporter, YQGE family, putative transporter.
  
     0.663
SFD71611.1
YaaC-like Protein.
  
     0.639
SFD83899.1
CBS domain-containing protein.
 
     0.591
SFD57534.1
Putative membrane protein, TIGR04086 family.
  
     0.532
SFD58377.1
Spore coat protein YsxE.
  
     0.518
SFD94127.1
3D (Asp-Asp-Asp) domain-containing protein.
  
     0.518
SFD58923.1
Germination protein M.
  
     0.515
SFD83274.1
Sporulation lipoprotein, YhcN/YlaJ family.
  
     0.505
SFD54687.1
Hypothetical protein.
  
     0.499
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.