STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD88747.1TRAP transporter, DctM subunit. (424 aa)    
Predicted Functional Partners:
SFD88730.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.968
SFD88783.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.914
SFD44050.1
C4-dicarboxylate transporter, DctQ subunit.
 
  0.863
SFD88477.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.857
SFD40964.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.848
SFD87647.1
C4-dicarboxylate transporter, DctQ subunit.
 
  0.848
SFD40947.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.787
SFD44034.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.787
SFD88494.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.787
SFD87630.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.787
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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