STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD87022.1O-antigen biosynthesis protein WbqP. (218 aa)    
Predicted Functional Partners:
SFD87038.1
UDP-glucose 4-epimerase.
  
 0.962
SFD87061.1
Galacturonosyltransferase.
    0.939
SFD66616.1
Uncharacterised nucleotidyltransferase.
  
 
 0.800
SFD67208.1
Acetyltransferase EpsM.
 
  
 0.790
SFD86833.1
Capsular exopolysaccharide family.
 
 
 0.789
SFD67412.1
Capsular exopolysaccharide family.
 
 
 0.772
SFD86916.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.737
SFD87005.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
  0.701
SFD86975.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.698
SFD67278.1
Transmembrane protein EpsG.
  
  
 0.696
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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