STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD87816.1Hypothetical protein. (549 aa)    
Predicted Functional Partners:
SFD87835.1
Peptide/nickel transport system substrate-binding protein.
       0.678
SFD60471.1
UPF0716 protein FxsA.
  
    0.622
SFD88305.1
Imidazolonepropionase.
  
     0.579
SFD88395.1
N-acyl-D-amino-acid deacylase.
 
     0.522
SFD87851.1
Peptide/nickel transport system permease protein.
       0.493
SFD87868.1
Peptide/nickel transport system permease protein.
       0.475
SFD87907.1
Peptide/nickel transport system ATP-binding protein/oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.422
SFD87888.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.415
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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