STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD87923.1RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (190 aa)    
Predicted Functional Partners:
SFD99794.1
IDEAL domain-containing protein.
  
     0.763
SFD53342.1
Hypothetical protein.
  
     0.754
SFD39194.1
Spore coat protein CotO.
  
     0.751
SFD80157.1
Hypothetical protein.
  
     0.749
SFD72386.1
Protein of unknown function.
  
     0.737
SFD76783.1
Protein of unknown function.
  
     0.737
SFE46501.1
Uncharacterized protein YpmB.
  
     0.736
SFD96939.1
Anti-sigma-28 factor, FlgM family.
  
    0.731
SFD93482.1
Hypothetical protein.
  
     0.724
SFD58727.1
Tetratricopeptide repeat-containing protein.
  
     0.715
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.