STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD95223.1Zinc transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family. (318 aa)    
Predicted Functional Partners:
SFD95238.1
Zinc transport system ATP-binding protein.
 
 
 0.999
SFD95250.1
Zinc transport system permease protein.
 
 
 0.998
SFD95266.1
Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family.
 
  
 0.838
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
 
  
 0.791
rpsZ
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.759
mntR
Mn-dependent transcriptional regulator, DtxR family; Central regulator of manganese homeostasis. Belongs to the DtxR/MntR family.
  
 
 0.738
SFD93531.1
Iron complex transport system ATP-binding protein.
 
  
 0.670
SFD36458.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
    
 0.551
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.530
SFD40702.1
Iron complex transport system ATP-binding protein.
    
 0.508
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.