STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE16802.1Spore coat protein CotF. (203 aa)    
Predicted Functional Partners:
SFE00416.1
Sporulation lipoprotein, YhcN/YlaJ family.
  
    0.820
SFD39213.1
Spore coat protein Z.
  
    0.641
SFE40004.1
Spore germination protein D.
  
    0.600
SFD82992.1
CBS domain-containing protein.
   
    0.574
SFD41070.1
YugN-like family protein.
  
     0.543
SFD78529.1
Protein of unknown function.
  
     0.524
tlp
Small acid-soluble spore protein (thioredoxin-like protein); Belongs to the Tlp family.
  
  
 0.509
SFD53034.1
Stage III sporulation protein AH.
  
   
 0.508
SFE08095.1
Bifunctional non-homologous end joining protein LigD.
  
     0.489
SFD39676.1
Hypothetical protein.
  
     0.479
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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