STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE21363.1Tripartite ATP-independent transporter, DctQ component. (112 aa)    
Predicted Functional Partners:
SFE21392.1
TRAP transporter, DctM subunit.
 
  0.889
SFE21342.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.618
SFE18104.1
Hypothetical protein.
  
     0.589
SFE21415.1
Glucosamine-6-phosphate deaminase.
 
  
  0.562
SFD40985.1
C4-dicarboxylate transporter, DctM subunit.
  
  0.468
SFD44072.1
C4-dicarboxylate transporter, DctM subunit.
  
  0.468
SFD69470.1
TRAP transporter, DctM subunit.
  
  0.468
SFD88465.1
TRAP transporter, DctM subunit.
  
  0.468
SFD88747.1
TRAP transporter, DctM subunit.
  
  0.468
SFD87669.1
TRAP transporter, DctM subunit.
  
  0.468
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.