STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE35300.1YppG-like protein. (111 aa)    
Predicted Functional Partners:
SFE00438.1
YhdB-like protein.
  
     0.767
SFD54713.1
Protein of unknown function.
  
    0.754
SFD51849.1
Protein of unknown function.
  
     0.740
SFD39194.1
Spore coat protein CotO.
  
     0.693
SFD54170.1
Hypothetical protein.
  
     0.686
SFE08721.1
Uncharacterized beta-barrel protein YwiB, DUF1934 family.
  
     0.684
SFE30278.1
YfkD-like protein.
  
     0.677
SFE10043.1
TATA-box binding.
  
     0.664
SFE35270.1
Thioredoxin reductase (NADPH).
 
     0.660
SFD58226.1
Hypothetical protein.
  
     0.658
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.